:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'phylofisher' .. highlight: bash phylofisher =========== .. conda:recipe:: phylofisher :replaces_section_title: :noindex: A package for the creation\, analysis\, and visualization of eukaryotic phylogenomic datasets. :homepage: https://github.com/TheBrownLab/PhyloFisher :documentation: https://thebrownlab.github.io/phylofisher-pages/ :license: MIT / MIT :recipe: /`phylofisher `_/`meta.yaml `_ .. conda:package:: phylofisher |downloads_phylofisher| |docker_phylofisher| :versions: .. raw:: html
1.2.13-01.2.12-01.2.11-01.2.10-01.2.9-01.2.8-01.2.7-11.2.7-01.2.6-0 ``1.2.13-0``,  ``1.2.12-0``,  ``1.2.11-0``,  ``1.2.10-0``,  ``1.2.9-0``,  ``1.2.8-0``,  ``1.2.7-1``,  ``1.2.7-0``,  ``1.2.6-0``,  ``1.2.5-0``,  ``1.2.3-1``,  ``1.2.3-0``,  ``1.2.2-0``,  ``1.2.1-0``,  ``1.2.0-0``,  ``1.1.2-0`` .. raw:: html
:depends astral-tree: ``5.7.8.*`` :depends biopython: :depends blast: :depends cd-hit: ``4.8.1.*`` :depends diamond: ``2.0.15.*`` :depends dist_est: ``1.1.*`` :depends ete3: :depends fasttree: ``2.1.10.*`` :depends hmmer: ``3.3.*`` :depends mafft: ``7.520.*`` :depends matplotlib-base: :depends pandas: :depends pyqt: :depends python: ``3.7.10.*`` :depends snakemake-minimal: ``6.1.*`` :depends trimal: ``1.4.1.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install phylofisher and update with:: mamba update phylofisher To create a new environment, run:: mamba create --name myenvname phylofisher with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/phylofisher: (see `phylofisher/tags`_ for valid values for ````) .. |downloads_phylofisher| image:: https://img.shields.io/conda/dn/bioconda/phylofisher.svg?style=flat :target: https://anaconda.org/bioconda/phylofisher :alt: (downloads) .. |docker_phylofisher| image:: https://quay.io/repository/biocontainers/phylofisher/status :target: https://quay.io/repository/biocontainers/phylofisher .. _`phylofisher/tags`: https://quay.io/repository/biocontainers/phylofisher?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/phylofisher/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/phylofisher/README.html