:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'pizzly' .. highlight: bash pizzly ====== .. conda:recipe:: pizzly :replaces_section_title: :noindex: Fast fusion detection using kallisto :homepage: https://github.com/pmelsted/pizzly :license: BSD-2 :recipe: /`pizzly `_/`meta.yaml `_ .. conda:package:: pizzly |downloads_pizzly| |docker_pizzly| :versions: ``0.37.3-3``,  ``0.37.3-2``,  ``0.37.1-1``,  ``0.37.1-0`` :depends h5py: :depends libgcc-ng: ``>=4.9`` :depends numpy: :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install pizzly and update with:: mamba update pizzly To create a new environment, run:: mamba create --name myenvname pizzly with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/pizzly: (see `pizzly/tags`_ for valid values for ````) .. |downloads_pizzly| image:: https://img.shields.io/conda/dn/bioconda/pizzly.svg?style=flat :target: https://anaconda.org/bioconda/pizzly :alt: (downloads) .. |docker_pizzly| image:: https://quay.io/repository/biocontainers/pizzly/status :target: https://quay.io/repository/biocontainers/pizzly .. _`pizzly/tags`: https://quay.io/repository/biocontainers/pizzly?tab=tags .. raw:: html Notes ----- Auxilliary scripts are available as commands \`\`pizzly\_flatten\_json.py\`\` and \`\`pizzly\_get\_fragment\_length.py\`\` along with the \`\`pizzly\`\` binary. Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pizzly/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/pizzly/README.html