:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'platypus-variant' .. highlight: bash platypus-variant ================ .. conda:recipe:: platypus-variant :replaces_section_title: :noindex: A Haplotype\-Based Variant Caller For Next Generation Sequence Data :homepage: http://www.well.ox.ac.uk/platypus :license: GPLv3 :recipe: /`platypus-variant `_/`meta.yaml `_ .. conda:package:: platypus-variant |downloads_platypus-variant| |docker_platypus-variant| :versions: .. raw:: html
0.8.1.2-60.8.1.2-50.8.1.2-40.8.1.2-30.8.1.2-20.8.1.2-10.8.1.2-00.8.1.1-30.8.1.1-2 ``0.8.1.2-6``,  ``0.8.1.2-5``,  ``0.8.1.2-4``,  ``0.8.1.2-3``,  ``0.8.1.2-2``,  ``0.8.1.2-1``,  ``0.8.1.2-0``,  ``0.8.1.1-3``,  ``0.8.1.1-2``,  ``0.8.1.1-1``,  ``0.8.1.1-0``,  ``0.8.1-1``,  ``0.8.1-0`` .. raw:: html
:depends htslib: ``>=1.17,<1.20.0a0`` :depends libgcc-ng: ``>=12`` :depends python: ``>=2.7,<2.8.0a0`` :depends python_abi: ``2.7.* *_cp27mu`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install platypus-variant and update with:: mamba update platypus-variant To create a new environment, run:: mamba create --name myenvname platypus-variant with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/platypus-variant: (see `platypus-variant/tags`_ for valid values for ````) .. |downloads_platypus-variant| image:: https://img.shields.io/conda/dn/bioconda/platypus-variant.svg?style=flat :target: https://anaconda.org/bioconda/platypus-variant :alt: (downloads) .. |docker_platypus-variant| image:: https://quay.io/repository/biocontainers/platypus-variant/status :target: https://quay.io/repository/biocontainers/platypus-variant .. _`platypus-variant/tags`: https://quay.io/repository/biocontainers/platypus-variant?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/platypus-variant/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/platypus-variant/README.html