:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'polystest' .. highlight: bash polystest ========= .. conda:recipe:: polystest :replaces_section_title: :noindex: Interactive tool for statistical testing\, data browsing and interactive visualization of quantitative omics data :homepage: https://bitbucket.org/veitveit/polystest/src/master/ :license: GPL / GPL (>=2) :recipe: /`polystest `_/`meta.yaml `_ :links: biotools: :biotools:`polystest`, doi: :doi:`10.1074/mcp.RA119.001777` PolySTest is a web service \(shiny app\) and command\-line tool for statistical testing\, data browsing and interactive visualization of quantitative omics data. It contains multiple statistical tests and a new method to incorporate missing values. .. conda:package:: polystest |downloads_polystest| |docker_polystest| :versions: ``1.3.4-0``,  ``1.3.2-0``,  ``1.2.2-0``,  ``1.2-0``,  ``1.1-2``,  ``1.1-1``,  ``1.01-1``,  ``1.01-0``,  ``1.1-0`` :depends bioconductor-limma: :depends bioconductor-qvalue: :depends r-base: :depends r-circlize: :depends r-dt: :depends r-fdrtool: :depends r-gplots: :depends r-heatmaply: :depends r-knitr: :depends r-matrixstats: :depends r-readxl: :depends r-shiny: :depends r-shinybs: :depends r-shinydashboard: :depends r-upsetr: :depends r-yaml: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install polystest and update with:: mamba update polystest To create a new environment, run:: mamba create --name myenvname polystest with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/polystest: (see `polystest/tags`_ for valid values for ````) .. |downloads_polystest| image:: https://img.shields.io/conda/dn/bioconda/polystest.svg?style=flat :target: https://anaconda.org/bioconda/polystest :alt: (downloads) .. |docker_polystest| image:: https://quay.io/repository/biocontainers/polystest/status :target: https://quay.io/repository/biocontainers/polystest .. _`polystest/tags`: https://quay.io/repository/biocontainers/polystest?tab=tags .. raw:: html Notes ----- PolySTest is available as shiny app via run\_polystest\_app.R or as command\-line tool\: runPolySTestCLI.R Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/polystest/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/polystest/README.html