:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'poppunk' .. highlight: bash poppunk ======= .. conda:recipe:: poppunk :replaces_section_title: :noindex: PopPUNK \(POPulation Partitioning Using Nucleotide Kmers\) :homepage: https://www.poppunk.net :license: APACHE / Apache-2.0 :recipe: /`poppunk `_/`meta.yaml `_ :links: doi: :doi:`10.1101/gr.241455.118` .. conda:package:: poppunk |downloads_poppunk| |docker_poppunk| :versions: .. raw:: html
2.6.5-02.6.4-02.6.3-02.6.2-02.6.1-02.6.0-12.6.0-02.5.0-02.4.0-2 ``2.6.5-0``,  ``2.6.4-0``,  ``2.6.3-0``,  ``2.6.2-0``,  ``2.6.1-0``,  ``2.6.0-1``,  ``2.6.0-0``,  ``2.5.0-0``,  ``2.4.0-2``,  ``2.4.0-1``,  ``2.4.0-0``,  ``2.3.0-0``,  ``2.2.0-0``,  ``2.1.1-0``,  ``2.0.2-0``,  ``2.0.1-0``,  ``1.2.2-0``,  ``1.2.0-0``,  ``1.1.7-0``,  ``1.1.6-0``,  ``1.1.5-0``,  ``1.1.4-0``,  ``1.1.3-0``,  ``1.1.2-0`` .. raw:: html
:depends _openmp_mutex: ``>=4.5`` :depends biopython: :depends dendropy: ``>=4.4.0`` :depends graph-tool: ``>=2.35`` :depends h5py: :depends hdbscan: :depends libgcc-ng: ``>=12`` :depends libgfortran-ng: :depends libgfortran5: ``>=12.3.0`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends mandrake: :depends matplotlib-base: :depends networkx: :depends numpy: :depends pandas: :depends pp-sketchlib: ``>=2.0.1`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends rapidnj: :depends requests: :depends scikit-learn: ``>=0.24`` :depends scipy: :depends tqdm: :depends treeswift: :depends xorg-libxaw: :depends xorg-libxcomposite: :depends xorg-libxcursor: :depends xorg-libxdamage: :depends xorg-libxfixes: :depends xorg-libxi: :depends xorg-libxinerama: :depends xorg-libxpm: :depends xorg-libxrandr: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install poppunk and update with:: mamba update poppunk To create a new environment, run:: mamba create --name myenvname poppunk with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/poppunk: (see `poppunk/tags`_ for valid values for ````) .. |downloads_poppunk| image:: https://img.shields.io/conda/dn/bioconda/poppunk.svg?style=flat :target: https://anaconda.org/bioconda/poppunk :alt: (downloads) .. |docker_poppunk| image:: https://quay.io/repository/biocontainers/poppunk/status :target: https://quay.io/repository/biocontainers/poppunk .. _`poppunk/tags`: https://quay.io/repository/biocontainers/poppunk?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/poppunk/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/poppunk/README.html