:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ppanini' .. highlight: bash ppanini ======= .. conda:recipe:: ppanini :replaces_section_title: :noindex: PPANINI\: Prioritization and Prediction of functional Annotations for Novel and Important genes via automated data Network Integration. :homepage: http://huttenhower.sph.harvard.edu/ppanini :license: MIT :recipe: /`ppanini `_/`meta.yaml `_ .. conda:package:: ppanini |downloads_ppanini| |docker_ppanini| :versions: ``0.7.4-0``,  ``0.6.4-2``,  ``0.6.4-0``,  ``0.6.2-0`` :depends biopython: ``>=1.66`` :depends matplotlib: ``>=2.0.2`` :depends numpy: ``>=1.9.2`` :depends pandas: ``>=0.18.1`` :depends python: ``<3`` :depends scikit-learn: ``>=0.14.1`` :depends scipy: ``>=0.13.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ppanini and update with:: mamba update ppanini To create a new environment, run:: mamba create --name myenvname ppanini with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ppanini: (see `ppanini/tags`_ for valid values for ````) .. |downloads_ppanini| image:: https://img.shields.io/conda/dn/bioconda/ppanini.svg?style=flat :target: https://anaconda.org/bioconda/ppanini :alt: (downloads) .. |docker_ppanini| image:: https://quay.io/repository/biocontainers/ppanini/status :target: https://quay.io/repository/biocontainers/ppanini .. _`ppanini/tags`: https://quay.io/repository/biocontainers/ppanini?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ppanini/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ppanini/README.html