:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'proteinortho' .. highlight: bash proteinortho ============ .. conda:recipe:: proteinortho :replaces_section_title: :noindex: Proteinortho is a tool to detect orthologous genes within different species. :homepage: https://gitlab.com/paulklemm_PHD/proteinortho/ :license: GPL / GPL-3.0-only :recipe: /`proteinortho `_/`meta.yaml `_ :links: biotools: :biotools:`proteinortho`, doi: :doi:`10.3389/fbinf.2023.1322477` .. conda:package:: proteinortho |downloads_proteinortho| |docker_proteinortho| :versions: .. raw:: html
6.3.1-06.3.0-06.2.3-16.2.3-06.2.2-06.2.1-06.2.0-06.1.7-06.1.6-0 ``6.3.1-0``,  ``6.3.0-0``,  ``6.2.3-1``,  ``6.2.3-0``,  ``6.2.2-0``,  ``6.2.1-0``,  ``6.2.0-0``,  ``6.1.7-0``,  ``6.1.6-0``,  ``6.1.5-0``,  ``6.1.4-0``,  ``6.1.3-0``,  ``6.1.2-0``,  ``6.1.1-1``,  ``6.1.1-0``,  ``6.1.0-2``,  ``6.1.0-1``,  ``6.1.0-0``,  ``6.0.35-0``,  ``6.0.34-0``,  ``6.0.33-1``,  ``6.0.33-0``,  ``6.0.32-0``,  ``6.0.31-0``,  ``6.0.30-0``,  ``6.0.29-1``,  ``6.0.29-0``,  ``6.0.28-1``,  ``6.0.28-0``,  ``6.0.27-0``,  ``6.0.26-0``,  ``6.0.25-0``,  ``6.0.24-0``,  ``6.0.23-0``,  ``6.0.22-0``,  ``6.0.21-0``,  ``6.0.20-0``,  ``6.0.19-0``,  ``6.0.18-1``,  ``6.0.18-0``,  ``6.0.17-0``,  ``6.0.16-1``,  ``6.0.16-0``,  ``6.0.15-0``,  ``6.0.14-0``,  ``6.0.13-0``,  ``6.0.12-0``,  ``6.0.11-0``,  ``6.0.10-0``,  ``6.0.9-0``,  ``6.0.8-0``,  ``6.0.7-0``,  ``6.0.6-0``,  ``6.0.5-0``,  ``6.0.4-0``,  ``6.0.3-0``,  ``6.0.2c-0``,  ``6.0.1-0``,  ``6.0-0``,  ``6.0b-0`` .. raw:: html
:depends _openmp_mutex: ``>=4.5`` :depends blis: :depends diamond: ``>=0.9.29`` :depends libgcc-ng: ``>=12`` :depends libgfortran-ng: :depends libgfortran5: ``>=12.3.0`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends perl: :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install proteinortho and update with:: mamba update proteinortho To create a new environment, run:: mamba create --name myenvname proteinortho with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/proteinortho: (see `proteinortho/tags`_ for valid values for ````) .. |downloads_proteinortho| image:: https://img.shields.io/conda/dn/bioconda/proteinortho.svg?style=flat :target: https://anaconda.org/bioconda/proteinortho :alt: (downloads) .. |docker_proteinortho| image:: https://quay.io/repository/biocontainers/proteinortho/status :target: https://quay.io/repository/biocontainers/proteinortho .. _`proteinortho/tags`: https://quay.io/repository/biocontainers/proteinortho?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/proteinortho/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/proteinortho/README.html