:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'provean' .. highlight: bash provean ======= .. conda:recipe:: provean :replaces_section_title: :noindex: PROVEAN \(Protein Variation Effect Analyzer\) is a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein. :homepage: https://www.jcvi.org/research/provean :license: GPL / GPL-3 :recipe: /`provean `_/`meta.yaml `_ :links: doi: :doi:`10.1093/bioinformatics/btv195`, doi: :doi:`10.1371/journal.pone.0046688` .. conda:package:: provean |downloads_provean| |docker_provean| :versions: ``1.1.5-2``,  ``1.1.5-1``,  ``1.1.5-0`` :depends blast: ``<=2.9`` :depends cd-hit: ``4.8.*`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install provean and update with:: mamba update provean To create a new environment, run:: mamba create --name myenvname provean with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/provean: (see `provean/tags`_ for valid values for ````) .. |downloads_provean| image:: https://img.shields.io/conda/dn/bioconda/provean.svg?style=flat :target: https://anaconda.org/bioconda/provean :alt: (downloads) .. |docker_provean| image:: https://quay.io/repository/biocontainers/provean/status :target: https://quay.io/repository/biocontainers/provean .. _`provean/tags`: https://quay.io/repository/biocontainers/provean?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/provean/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/provean/README.html