:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'pyloh' .. highlight: bash pyloh ===== .. conda:recipe:: pyloh :replaces_section_title: :noindex: Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity :homepage: https://github.com/uci-cbcl/PyLOH :license: GPLv2 :recipe: /`pyloh `_/`meta.yaml `_ .. conda:package:: pyloh |downloads_pyloh| |docker_pyloh| :versions: ``1.4.3-2``,  ``1.4.3-1``,  ``1.4.3-0``,  ``1.4.1-1`` :depends matplotlib: ``>=1.2`` :depends numpy: ``>=1.6.1`` :depends pysam: ``>=0.7`` :depends python: ``<3`` :depends scipy: ``>=0.10`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install pyloh and update with:: mamba update pyloh To create a new environment, run:: mamba create --name myenvname pyloh with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/pyloh: (see `pyloh/tags`_ for valid values for ````) .. |downloads_pyloh| image:: https://img.shields.io/conda/dn/bioconda/pyloh.svg?style=flat :target: https://anaconda.org/bioconda/pyloh :alt: (downloads) .. |docker_pyloh| image:: https://quay.io/repository/biocontainers/pyloh/status :target: https://quay.io/repository/biocontainers/pyloh .. _`pyloh/tags`: https://quay.io/repository/biocontainers/pyloh?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pyloh/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/pyloh/README.html