:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'pypgx' .. highlight: bash pypgx ===== .. conda:recipe:: pypgx :replaces_section_title: :noindex: A Python package for pharmacogenomics research :homepage: https://github.com/sbslee/pypgx :documentation: https://pypgx.readthedocs.io/en/latest/ :license: MIT / MIT :recipe: /`pypgx `_/`meta.yaml `_ .. conda:package:: pypgx |downloads_pypgx| |docker_pypgx| :versions: .. raw:: html
0.23.0-00.22.0-00.21.0-00.20.0-00.19.0-00.18.0-00.17.0-00.16.0-00.15.0-0 ``0.23.0-0``,  ``0.22.0-0``,  ``0.21.0-0``,  ``0.20.0-0``,  ``0.19.0-0``,  ``0.18.0-0``,  ``0.17.0-0``,  ``0.16.0-0``,  ``0.15.0-0``,  ``0.14.0-0``,  ``0.13.0-0``,  ``0.12.0-0``,  ``0.11.0-0``,  ``0.10.1-0``,  ``0.10.0-0``,  ``0.9.0-0``,  ``0.8.0-0``,  ``0.7.0-0``,  ``0.6.0-0``,  ``0.5.0-0``,  ``0.4.1-0`` .. raw:: html
:depends fuc: :depends openjdk: :depends pysam: ``>=0.15`` :depends python: :depends scikit-learn: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install pypgx and update with:: mamba update pypgx To create a new environment, run:: mamba create --name myenvname pypgx with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/pypgx: (see `pypgx/tags`_ for valid values for ````) .. |downloads_pypgx| image:: https://img.shields.io/conda/dn/bioconda/pypgx.svg?style=flat :target: https://anaconda.org/bioconda/pypgx :alt: (downloads) .. |docker_pypgx| image:: https://quay.io/repository/biocontainers/pypgx/status :target: https://quay.io/repository/biocontainers/pypgx .. _`pypgx/tags`: https://quay.io/repository/biocontainers/pypgx?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pypgx/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/pypgx/README.html