:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'pysradb'
.. highlight: bash

pysradb
=======

.. conda:recipe:: pysradb
   :replaces_section_title:
   :noindex:

   Python package for retrieving metadata and downloading datasets from SRA\/ENA\/GEO

   :homepage: https://github.com/saketkc/pysradb
   :documentation: https://saketkc.github.io/pysradb
   
   :license: BSD / BSD-3-Clause
   :recipe: /`pysradb <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/pysradb>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/pysradb/meta.yaml>`_
   :links: biotools: :biotools:`pysradb`, doi: :doi:`10.12688/f1000research.18676.1`

   Python package for retrieving metadata and downloading datasets from SRA\/ENA\/GEO


.. conda:package:: pysradb

   |downloads_pysradb| |docker_pysradb|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>2.2.0-0</code>,  <code>2.1.0-0</code>,  <code>2.0.2-0</code>,  <code>2.0.1-0</code>,  <code>2.0.0-0</code>,  <code>1.4.2-0</code>,  <code>1.4.1-1</code>,  <code>1.4.1-0</code>,  <code>1.3.0-0</code>,  </span></summary>
      

      ``2.2.0-0``,  ``2.1.0-0``,  ``2.0.2-0``,  ``2.0.1-0``,  ``2.0.0-0``,  ``1.4.2-0``,  ``1.4.1-1``,  ``1.4.1-0``,  ``1.3.0-0``,  ``1.2.0-0``,  ``1.1.0-0``,  ``1.0.1-0``,  ``1.0.0-0``,  ``0.11.1-0``,  ``0.11.0-0``,  ``0.10.4-0``,  ``0.10.2-0``,  ``0.10.1-0``,  ``0.10.0-0``,  ``0.9.9-0``,  ``0.9.7-0``,  ``0.9.6-0``,  ``0.9.0-0``,  ``0.8.0-0``,  ``0.7.1-0``,  ``0.6.0-0``,  ``0.4.2-0``,  ``0.4.0-0``,  ``0.3.0-0``,  ``0.2.2-0``

      
      .. raw:: html

         </details>
      

   
   :depends lxml: ``>=4.6.3``
   :depends pandas: ``>=1.3.2``
   :depends python: ``>=3.7``
   :depends requests: ``>=2.26.0``
   :depends requests-ftp: ``>=0.3.1``
   :depends tqdm: ``>=4.62.1``
   :depends xmltodict: ``>=0.12.0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install pysradb

   and update with::

      mamba update pysradb

  To create a new environment, run::

      mamba create --name myenvname pysradb

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/pysradb:<tag>

   (see `pysradb/tags`_ for valid values for ``<tag>``)


.. |downloads_pysradb| image:: https://img.shields.io/conda/dn/bioconda/pysradb.svg?style=flat
   :target: https://anaconda.org/bioconda/pysradb
   :alt:   (downloads)
.. |docker_pysradb| image:: https://quay.io/repository/biocontainers/pysradb/status
   :target: https://quay.io/repository/biocontainers/pysradb
.. _`pysradb/tags`: https://quay.io/repository/biocontainers/pysradb?tab=tags


.. raw:: html

    <script>
        var package = "pysradb";
        var versions = ["2.2.0","2.1.0","2.0.2","2.0.1","2.0.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pysradb/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/pysradb/README.html