:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'quast' .. highlight: bash quast ===== .. conda:recipe:: quast :replaces_section_title: :noindex: Quality Assessment Tool for Genome Assemblies :homepage: http://quast.sourceforge.net/ :license: Custom :recipe: /`quast `_/`meta.yaml `_ :links: biotools: :biotools:`quast`, doi: :doi:`10.1093/bioinformatics/btt086` .. conda:package:: quast |downloads_quast| |docker_quast| :versions: .. raw:: html
5.0.2-25.0.2-15.0.2-05.0.1-05.0.0-15.0.0-04.6.3-24.6.3-14.6.3-0 ``5.0.2-2``,  ``5.0.2-1``,  ``5.0.2-0``,  ``5.0.1-0``,  ``5.0.0-1``,  ``5.0.0-0``,  ``4.6.3-2``,  ``4.6.3-1``,  ``4.6.3-0``,  ``4.6.1-0``,  ``4.5-1``,  ``4.4-1``,  ``4.4-0``,  ``4.3-2``,  ``4.3-1``,  ``4.1-1``,  ``4.1-0``,  ``3.2-1`` .. raw:: html
:depends blast: :depends circos: :depends glimmerhmm: :depends joblib: :depends libgcc-ng: ``>=7.5.0`` :depends matplotlib-base: :depends minimap2: ``>=2.10`` :depends openjdk: ``>=8`` :depends perl: ``>=5.26.2,<5.26.3.0a0`` :depends python: ``>=2.7,<2.8.0a0`` :depends python_abi: ``2.7.* *_cp27mu`` :depends simplejson: :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install quast and update with:: conda update quast or use the docker container:: docker pull quay.io/biocontainers/quast: (see `quast/tags`_ for valid values for ````) .. |downloads_quast| image:: https://img.shields.io/conda/dn/bioconda/quast.svg?style=flat :target: https://anaconda.org/bioconda/quast :alt: (downloads) .. |docker_quast| image:: https://quay.io/repository/biocontainers/quast/status :target: https://quay.io/repository/biocontainers/quast .. _`quast/tags`: https://quay.io/repository/biocontainers/quast?tab=tags Notes ----- \- GeneMark gene prediction software is disabled due to licensing issues Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/quast/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/quast/README.html