:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-basejump' .. highlight: bash r-basejump ========== .. conda:recipe:: r-basejump :replaces_section_title: :noindex: Base functions for bioinformatics and R package development. :homepage: https://r.acidgenomics.com/packages/basejump/ :developer docs: https://github.com/acidgenomics/r-basejump :license: GPL / AGPL-3.0 :recipe: /`r-basejump `_/`meta.yaml `_ .. conda:package:: r-basejump |downloads_r-basejump| |docker_r-basejump| :versions: .. raw:: html
0.18.0-10.18.0-00.17.0-10.17.0-00.16.5-10.16.5-00.16.4-10.16.4-00.16.3-0 ``0.18.0-1``,  ``0.18.0-0``,  ``0.17.0-1``,  ``0.17.0-0``,  ``0.16.5-1``,  ``0.16.5-0``,  ``0.16.4-1``,  ``0.16.4-0``,  ``0.16.3-0``,  ``0.16.2-0``,  ``0.16.1-1``,  ``0.16.1-0``,  ``0.15.0-0``,  ``0.14.23-0``,  ``0.14.22-0``,  ``0.14.21-0``,  ``0.14.20-0``,  ``0.14.19-0``,  ``0.14.18-0``,  ``0.14.17-2``,  ``0.14.17-1``,  ``0.14.17-0``,  ``0.13.4-0``,  ``0.13.2-0``,  ``0.12.16-0``,  ``0.12.15-0``,  ``0.12.14-0``,  ``0.12.13-0``,  ``0.12.10-0``,  ``0.12.9-0``,  ``0.12.8-1``,  ``0.12.8-0``,  ``0.12.7-0``,  ``0.12.6-1``,  ``0.12.6-0``,  ``0.12.5-1``,  ``0.12.5-0``,  ``0.12.4-0``,  ``0.12.3-0``,  ``0.12.2-0``,  ``0.12.1-0``,  ``0.12.0-0``,  ``0.11.23-0``,  ``0.11.22-0``,  ``0.11.21-0``,  ``0.11.20-1``,  ``0.11.20-0``,  ``0.11.19-0``,  ``0.11.18-0``,  ``0.11.17-0``,  ``0.11.16-0``,  ``0.11.15-0``,  ``0.11.14-0``,  ``0.11.13-0``,  ``0.11.12-0``,  ``0.11.11-0``,  ``0.11.10-0``,  ``0.11.8-0``,  ``0.11.7-0``,  ``0.11.5-0``,  ``0.10.9-1``,  ``0.10.9-0``,  ``0.9.11-0``,  ``0.9.9-0``,  ``0.7.2-1``,  ``0.7.2-0``,  ``0.5.9-0``,  ``0.5.3-0``,  ``0.1.1-0`` .. raw:: html
:depends bioconductor-singlecellexperiment: ``>=1.22.0`` :depends bioconductor-summarizedexperiment: ``>=1.30.0`` :depends r-acidbase: ``>=0.7.0`` :depends r-acidexperiment: ``>=0.5.0`` :depends r-acidgenomes: ``>=0.6.0`` :depends r-acidmarkdown: ``>=0.3.0`` :depends r-acidplots: ``>=0.7.0`` :depends r-acidplyr: ``>=0.5.0`` :depends r-acidsinglecell: ``>=0.4.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-pipette: ``>=0.14.0`` :depends r-syntactic: ``>=0.7.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-basejump and update with:: mamba update r-basejump To create a new environment, run:: mamba create --name myenvname r-basejump with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-basejump: (see `r-basejump/tags`_ for valid values for ````) .. |downloads_r-basejump| image:: https://img.shields.io/conda/dn/bioconda/r-basejump.svg?style=flat :target: https://anaconda.org/bioconda/r-basejump :alt: (downloads) .. |docker_r-basejump| image:: https://quay.io/repository/biocontainers/r-basejump/status :target: https://quay.io/repository/biocontainers/r-basejump .. _`r-basejump/tags`: https://quay.io/repository/biocontainers/r-basejump?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-basejump/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-basejump/README.html