:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'r-breakaway'
.. highlight: bash

r-breakaway
===========

.. conda:recipe:: r-breakaway
   :replaces_section_title:
   :noindex:

   Understanding the drivers of microbial diversity is an important frontier of microbial ecology\, and investigating the diversity of samples from microbial ecosystems is a common step in any microbiome analysis. \'breakaway\' is the premier package for statistical analysis of microbial diversity. \'breakaway\' implements the latest and greatest estimates of species richness\, as well as the most commonly used estimates. Methods uniquely available in this package include objective Bayes estimators described in Barger and Bunge \(2010\) \<doi\:10.1214\/10\-BA527\>\, frequency\-ratio\-based estimators described in Willis and Bunge \(2015\) \<doi\:10.1111\/biom.12332\>\, and as described in Willis\, Whitman\, and Bunge \(2016\) \<doi\:10.1111\/rssc.12206\>\, a linear modeling approach for detecting changes in diversity.

   :homepage: https://adw96.github.io/breakaway/
   :license: GPL2 / GPL-2
   :recipe: /`r-breakaway <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-breakaway>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-breakaway/meta.yaml>`_

   


.. conda:package:: r-breakaway

   |downloads_r-breakaway| |docker_r-breakaway|

   :versions:
      
      

      ``4.7.9-2``,  ``4.7.9-1``,  ``4.7.9-0``,  ``3.0-0``

      

   
   :depends bioconductor-phyloseq: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-ggplot2: 
   :depends r-lme4: 
   :depends r-magrittr: 
   :depends r-mass: 
   :depends r-tibble: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install r-breakaway

   and update with::

      mamba update r-breakaway

  To create a new environment, run::

      mamba create --name myenvname r-breakaway

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/r-breakaway:<tag>

   (see `r-breakaway/tags`_ for valid values for ``<tag>``)


.. |downloads_r-breakaway| image:: https://img.shields.io/conda/dn/bioconda/r-breakaway.svg?style=flat
   :target: https://anaconda.org/bioconda/r-breakaway
   :alt:   (downloads)
.. |docker_r-breakaway| image:: https://quay.io/repository/biocontainers/r-breakaway/status
   :target: https://quay.io/repository/biocontainers/r-breakaway
.. _`r-breakaway/tags`: https://quay.io/repository/biocontainers/r-breakaway?tab=tags


.. raw:: html

    <script>
        var package = "r-breakaway";
        var versions = ["4.7.9","4.7.9","4.7.9","3.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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