:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-genomictools.filehandler' .. highlight: bash r-genomictools.filehandler ========================== .. conda:recipe:: r-genomictools.filehandler :replaces_section_title: :noindex: A collection of I\/O tools for handling the most commonly used genomic datafiles\, like fasta\/\-q\, bed\, gff\, gtf\, ped\/map and vcf. :homepage: https://CRAN.R-project.org/package=GenomicTools.fileHandler :license: GPL2 / GPL-2 :recipe: /`r-genomictools.filehandler `_/`meta.yaml `_ .. conda:package:: r-genomictools.filehandler |downloads_r-genomictools.filehandler| |docker_r-genomictools.filehandler| :versions: ``0.1.5.9-4``,  ``0.1.5.9-3``,  ``0.1.5.9-2``,  ``0.1.5.9-1``,  ``0.1.5.9-0`` :depends bioconductor-snpstats: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-data.table: ``>=1.9.6`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-genomictools.filehandler and update with:: mamba update r-genomictools.filehandler To create a new environment, run:: mamba create --name myenvname r-genomictools.filehandler with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-genomictools.filehandler: (see `r-genomictools.filehandler/tags`_ for valid values for ````) .. |downloads_r-genomictools.filehandler| image:: https://img.shields.io/conda/dn/bioconda/r-genomictools.filehandler.svg?style=flat :target: https://anaconda.org/bioconda/r-genomictools.filehandler :alt: (downloads) .. |docker_r-genomictools.filehandler| image:: https://quay.io/repository/biocontainers/r-genomictools.filehandler/status :target: https://quay.io/repository/biocontainers/r-genomictools.filehandler .. _`r-genomictools.filehandler/tags`: https://quay.io/repository/biocontainers/r-genomictools.filehandler?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-genomictools.filehandler/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-genomictools.filehandler/README.html