:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'r-grbase'
.. highlight: bash

r-grbase
========

.. conda:recipe:: r-grbase
   :replaces_section_title:
   :noindex:

   The \'gRbase\' package provides graphical modelling features used by e.g. the packages \'gRain\'\, \'gRim\' and \'gRc\'. \'gRbase\' implements graph algorithms including \(i\) maximum cardinality search \(for marked and unmarked graphs\). \(ii\) moralization\, \(iii\) triangulation\, \(iv\) creation of junction tree. \'gRbase\' facilitates array operations\, \'gRbase\' implements functions for testing for conditional independence. \'gRbase\' illustrates how hierarchical log\-linear models may be implemented and describes concept of graphical meta data. The facilities of the package are documented in the book by Højsgaard\, Edwards and Lauritzen \(2012\, \<doi\:10.1007\/978\-1\-4614\-2299\-0\>\) and in the paper by Dethlefsen and Højsgaard\, \(2005\, \<doi\:10.18637\/jss.v014.i17\>\). Please see \'citation\(\"gRbase\"\)\' for citation details. NOTICE  \'gRbase\' requires that the packages graph\, \'Rgraphviz\' and \'RBGL\' are installed from \'bioconductor\'\; for installation instructions please refer to the web page given below.

   :homepage: http://people.math.aau.dk/~sorenh/software/gR/
   :license: GPL2 / GPL-2.0-or-later
   :recipe: /`r-grbase <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-grbase>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-grbase/meta.yaml>`_

   


.. conda:package:: r-grbase

   |downloads_r-grbase| |docker_r-grbase|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>2.0.1-0</code>,  <code>2.0.0-0</code>,  <code>1.9.0-0</code>,  <code>1.8.9-3</code>,  <code>1.8.9-2</code>,  <code>1.8.9-1</code>,  <code>1.8.9-0</code>,  <code>1.8.8-1</code>,  <code>1.8.8-0</code>,  </span></summary>
      

      ``2.0.1-0``,  ``2.0.0-0``,  ``1.9.0-0``,  ``1.8.9-3``,  ``1.8.9-2``,  ``1.8.9-1``,  ``1.8.9-0``,  ``1.8.8-1``,  ``1.8.8-0``,  ``1.8.7-1``,  ``1.8.7-0``,  ``1.8_6.7-2``,  ``1.8_6.7-1``,  ``1.8_6.7-0``,  ``1.8_3.4-6``,  ``1.8_3.4-5``,  ``1.8_3.4-4``,  ``1.8_3.4-3``,  ``1.8_3.4-2``,  ``1.8_3.4-1``,  ``1.8_3.4-0``

      
      .. raw:: html

         </details>
      

   
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc-ng: ``>=12``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends libstdcxx-ng: ``>=12``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-igraph: 
   :depends r-magrittr: 
   :depends r-matrix: 
   :depends r-rcpp: ``>=0.11.1``
   :depends r-rcpparmadillo: 
   :depends r-rcppeigen: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install r-grbase

   and update with::

      mamba update r-grbase

  To create a new environment, run::

      mamba create --name myenvname r-grbase

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/r-grbase:<tag>

   (see `r-grbase/tags`_ for valid values for ``<tag>``)


.. |downloads_r-grbase| image:: https://img.shields.io/conda/dn/bioconda/r-grbase.svg?style=flat
   :target: https://anaconda.org/bioconda/r-grbase
   :alt:   (downloads)
.. |docker_r-grbase| image:: https://quay.io/repository/biocontainers/r-grbase/status
   :target: https://quay.io/repository/biocontainers/r-grbase
.. _`r-grbase/tags`: https://quay.io/repository/biocontainers/r-grbase?tab=tags


.. raw:: html

    <script>
        var package = "r-grbase";
        var versions = ["2.0.1","2.0.0","1.9.0","1.8.9","1.8.9"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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