:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-jetset' .. highlight: bash r-jetset ======== .. conda:recipe:: r-jetset :replaces_section_title: :noindex: On Affymetrix gene expression microarrays\, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene \"signature\" that is defined by gene names rather than by specific probe sets. This package provides a one\-to\-one mapping from gene to \"best\" probe set for four Affymetrix human gene expression microarrays\: hgu95av2\, hgu133a\, hgu133plus2\, and u133x3p. This package also includes the pre\-calculated probe set quality scores that were used to define the mapping. :homepage: http://www.cbs.dtu.dk/biotools/jetset/ :license: OTHER / Artistic-2.0 :recipe: /`r-jetset `_/`meta.yaml `_ .. conda:package:: r-jetset |downloads_r-jetset| |docker_r-jetset| :versions: ``3.4.0-2``,  ``3.4.0-1``,  ``3.4.0-0`` :depends bioconductor-annotationdbi: :depends bioconductor-org.hs.eg.db: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-jetset and update with:: mamba update r-jetset To create a new environment, run:: mamba create --name myenvname r-jetset with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-jetset: (see `r-jetset/tags`_ for valid values for ````) .. |downloads_r-jetset| image:: https://img.shields.io/conda/dn/bioconda/r-jetset.svg?style=flat :target: https://anaconda.org/bioconda/r-jetset :alt: (downloads) .. |docker_r-jetset| image:: https://quay.io/repository/biocontainers/r-jetset/status :target: https://quay.io/repository/biocontainers/r-jetset .. _`r-jetset/tags`: https://quay.io/repository/biocontainers/r-jetset?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-jetset/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-jetset/README.html