:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-leidenbase' .. highlight: bash r-leidenbase ============ .. conda:recipe:: r-leidenbase :replaces_section_title: :noindex: An R to C interface that runs the Leiden community detection algorithm to find a basic partition :homepage: https://cole-trapnell-lab.github.io/leidenbase/ :license: GPL2, GPL3, BSD :recipe: /`r-leidenbase `_/`meta.yaml `_ .. conda:package:: r-leidenbase |downloads_r-leidenbase| |docker_r-leidenbase| :versions: .. raw:: html
0.1.18-00.1.12-00.1.3-30.1.3-20.1.3-10.1.3-00.1.0-30.1.0-20.1.0-1 ``0.1.18-0``,  ``0.1.12-0``,  ``0.1.3-3``,  ``0.1.3-2``,  ``0.1.3-1``,  ``0.1.3-0``,  ``0.1.0-3``,  ``0.1.0-2``,  ``0.1.0-1``,  ``0.1.0-0`` .. raw:: html
:depends glpk: ``>=5.0,<6.0a0`` :depends gmp: ``>=6.2.1,<7.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends libgfortran-ng: :depends libgfortran5: ``>=12.3.0`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends libxml2: ``>=2.11.4,<2.12.0a0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-igraph: ``>=1.3.4`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-leidenbase and update with:: mamba update r-leidenbase To create a new environment, run:: mamba create --name myenvname r-leidenbase with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-leidenbase: (see `r-leidenbase/tags`_ for valid values for ````) .. |downloads_r-leidenbase| image:: https://img.shields.io/conda/dn/bioconda/r-leidenbase.svg?style=flat :target: https://anaconda.org/bioconda/r-leidenbase :alt: (downloads) .. |docker_r-leidenbase| image:: https://quay.io/repository/biocontainers/r-leidenbase/status :target: https://quay.io/repository/biocontainers/r-leidenbase .. _`r-leidenbase/tags`: https://quay.io/repository/biocontainers/r-leidenbase?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-leidenbase/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-leidenbase/README.html