:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-sigqc' .. highlight: bash r-sigqc ======= .. conda:recipe:: r-sigqc :replaces_section_title: :noindex: Provides gene signature quality control metrics in publication ready plots. Namely\, enables the visualization of properties such as expression\, variability\, correlation\, and comparison of methods of standardisation and scoring metrics. :homepage: https://CRAN.R-project.org/package=sigQC :license: GPL / GPL-3.0-or-later :recipe: /`r-sigqc `_/`meta.yaml `_ .. conda:package:: r-sigqc |downloads_r-sigqc| |docker_r-sigqc| :versions: .. raw:: html
0.1.23-10.1.23-00.1.22-20.1.22-10.1.22-00.1.21-40.1.21-30.1.21-20.1.21-1 ``0.1.23-1``,  ``0.1.23-0``,  ``0.1.22-2``,  ``0.1.22-1``,  ``0.1.22-0``,  ``0.1.21-4``,  ``0.1.21-3``,  ``0.1.21-2``,  ``0.1.21-1``,  ``0.1.21-0``,  ``0.1.14-0`` .. raw:: html
:depends bioconductor-complexheatmap: :depends bioconductor-gsva: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-biclust: :depends r-circlize: :depends r-class: :depends r-cluster: :depends r-fmsb: :depends r-gplots: :depends r-gridgraphics: :depends r-kernsmooth: :depends r-lattice: :depends r-mass: :depends r-mclust: :depends r-moments: :depends r-nnet: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-sigqc and update with:: mamba update r-sigqc To create a new environment, run:: mamba create --name myenvname r-sigqc with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-sigqc: (see `r-sigqc/tags`_ for valid values for ````) .. |downloads_r-sigqc| image:: https://img.shields.io/conda/dn/bioconda/r-sigqc.svg?style=flat :target: https://anaconda.org/bioconda/r-sigqc :alt: (downloads) .. |docker_r-sigqc| image:: https://quay.io/repository/biocontainers/r-sigqc/status :target: https://quay.io/repository/biocontainers/r-sigqc .. _`r-sigqc/tags`: https://quay.io/repository/biocontainers/r-sigqc?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-sigqc/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-sigqc/README.html