:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-swamp' .. highlight: bash r-swamp ======= .. conda:recipe:: r-swamp :replaces_section_title: :noindex: Collection of functions to connect the structure of the data with the information on the samples. Three types of associations are covered\: 1. linear model of principal components. 2. hierarchical clustering analysis. 3. distribution of features\-sample annotation associations. Additionally\, the inter\-relation between sample annotations can be analyzed. Simple methods are provided for the correction of batch effects and removal of principal components. :homepage: https://CRAN.R-project.org/package=swamp :license: GPL3 / GPL (>= 2) :recipe: /`r-swamp `_/`meta.yaml `_ .. conda:package:: r-swamp |downloads_r-swamp| |docker_r-swamp| :versions: .. raw:: html
1.5.1-51.5.1-41.5.1-31.5.1-21.5.1-11.5.1-01.4.1-31.4.1-21.4.1-1 ``1.5.1-5``,  ``1.5.1-4``,  ``1.5.1-3``,  ``1.5.1-2``,  ``1.5.1-1``,  ``1.5.1-0``,  ``1.4.1-3``,  ``1.4.1-2``,  ``1.4.1-1``,  ``1.4.1-0``,  ``1.3.1-0`` .. raw:: html
:depends bioconductor-impute: :depends r-amap: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-gplots: :depends r-mass: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-swamp and update with:: mamba update r-swamp To create a new environment, run:: mamba create --name myenvname r-swamp with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-swamp: (see `r-swamp/tags`_ for valid values for ````) .. |downloads_r-swamp| image:: https://img.shields.io/conda/dn/bioconda/r-swamp.svg?style=flat :target: https://anaconda.org/bioconda/r-swamp :alt: (downloads) .. |docker_r-swamp| image:: https://quay.io/repository/biocontainers/r-swamp/status :target: https://quay.io/repository/biocontainers/r-swamp .. _`r-swamp/tags`: https://quay.io/repository/biocontainers/r-swamp?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-swamp/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-swamp/README.html