:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-tidygenomics' .. highlight: bash r-tidygenomics ============== .. conda:recipe:: r-tidygenomics :replaces_section_title: :noindex: Handle genomic data within data frames just as you would with \'GRanges\'. This packages provides method to deal with genomic intervals the \"tidy\-way\" which makes it simpler to integrate in the the general data munging process. The API is inspired by the popular \'bedtools\' and the genome\_join\(\) method from the \'fuzzyjoin\' package. :homepage: https://github.com/const-ae/tidygenomics :license: GPL3 / GPL-3 :recipe: /`r-tidygenomics `_/`meta.yaml `_ .. conda:package:: r-tidygenomics |downloads_r-tidygenomics| |docker_r-tidygenomics| :versions: .. raw:: html
0.1.2-70.1.2-60.1.2-50.1.2-40.1.2-30.1.2-20.1.2-10.1.2-00.1.0-3 ``0.1.2-7``,  ``0.1.2-6``,  ``0.1.2-5``,  ``0.1.2-4``,  ``0.1.2-3``,  ``0.1.2-2``,  ``0.1.2-1``,  ``0.1.2-0``,  ``0.1.0-3``,  ``0.1.0-2``,  ``0.1.0-0`` .. raw:: html
:depends bioconductor-iranges: :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-dplyr: :depends r-fuzzyjoin: ``>=0.1.3`` :depends r-purrr: :depends r-rcpp: :depends r-rlang: :depends r-tidyr: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-tidygenomics and update with:: mamba update r-tidygenomics To create a new environment, run:: mamba create --name myenvname r-tidygenomics with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-tidygenomics: (see `r-tidygenomics/tags`_ for valid values for ````) .. |downloads_r-tidygenomics| image:: https://img.shields.io/conda/dn/bioconda/r-tidygenomics.svg?style=flat :target: https://anaconda.org/bioconda/r-tidygenomics :alt: (downloads) .. |docker_r-tidygenomics| image:: https://quay.io/repository/biocontainers/r-tidygenomics/status :target: https://quay.io/repository/biocontainers/r-tidygenomics .. _`r-tidygenomics/tags`: https://quay.io/repository/biocontainers/r-tidygenomics?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-tidygenomics/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-tidygenomics/README.html