:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'rapsearch' .. highlight: bash rapsearch ========= .. conda:recipe:: rapsearch :replaces_section_title: :noindex: RAPSearch2 is a tool for fast protein similarity searches. :homepage: http://omics.informatics.indiana.edu/mg/RAPSearch2/ :license: GNU General Public License v3 (GPLv3) :recipe: /`rapsearch `_/`meta.yaml `_ :links: biotools: :biotools:`rapsearch` .. conda:package:: rapsearch |downloads_rapsearch| |docker_rapsearch| :versions: ``2.24-7``,  ``2.24-6``,  ``2.24-5``,  ``2.24-4``,  ``2.24-3``,  ``2.24-2``,  ``2.24-1``,  ``2.24-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install rapsearch and update with:: mamba update rapsearch To create a new environment, run:: mamba create --name myenvname rapsearch with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/rapsearch: (see `rapsearch/tags`_ for valid values for ````) .. |downloads_rapsearch| image:: https://img.shields.io/conda/dn/bioconda/rapsearch.svg?style=flat :target: https://anaconda.org/bioconda/rapsearch :alt: (downloads) .. |docker_rapsearch| image:: https://quay.io/repository/biocontainers/rapsearch/status :target: https://quay.io/repository/biocontainers/rapsearch .. _`rapsearch/tags`: https://quay.io/repository/biocontainers/rapsearch?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rapsearch/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/rapsearch/README.html