:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'raptor'
.. highlight: bash

raptor
======

.. conda:recipe:: raptor
   :replaces_section_title:
   :noindex:

   Raptor\: A fast and space\-efficient pre\-filter for querying very large collections of nucleotide sequences

   :homepage: https://github.com/seqan/raptor
   :documentation: https://seqan-raptor.vercel.app
   
   :license: BSD / BSD-3-Clause License
   :recipe: /`raptor <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/raptor>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/raptor/meta.yaml>`_
   :links: doi: :doi:`10.1016/j.isci.2021.102782`, doi: :doi:`10.1186/s13059-023-02971-4`

   Raptor is a tool for approximately searching many queries in large collections of nucleotide sequences.


.. conda:package:: raptor

   |downloads_raptor| |docker_raptor|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>3.0.1-2</code>,  <code>3.0.0-1</code>,  <code>3.0.0-0</code>,  <code>2.0.0-3</code>,  <code>2.0.0-2</code>,  <code>2.0.0-1</code>,  <code>2.0.0-0</code>,  <code>1.1.0-1</code>,  <code>1.1.0-0</code>,  </span></summary>
      

      ``3.0.1-2``,  ``3.0.0-1``,  ``3.0.0-0``,  ``2.0.0-3``,  ``2.0.0-2``,  ``2.0.0-1``,  ``2.0.0-0``,  ``1.1.0-1``,  ``1.1.0-0``,  ``1.0.1-0``,  ``1.0.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bzip2: ``>=1.0.8,<2.0a0``
   :depends libgcc-ng: ``>=12``
   :depends libstdcxx-ng: ``>=12``
   :depends libzlib: ``>=1.2.13,<1.3.0a0``
   :depends yaml-cpp: ``>=0.8.0,<0.9.0a0``
   :depends zlib: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install raptor

   and update with::

      mamba update raptor

  To create a new environment, run::

      mamba create --name myenvname raptor

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/raptor:<tag>

   (see `raptor/tags`_ for valid values for ``<tag>``)


.. |downloads_raptor| image:: https://img.shields.io/conda/dn/bioconda/raptor.svg?style=flat
   :target: https://anaconda.org/bioconda/raptor
   :alt:   (downloads)
.. |docker_raptor| image:: https://quay.io/repository/biocontainers/raptor/status
   :target: https://quay.io/repository/biocontainers/raptor
.. _`raptor/tags`: https://quay.io/repository/biocontainers/raptor?tab=tags


.. raw:: html

    <script>
        var package = "raptor";
        var versions = ["3.0.1","3.0.0","3.0.0","2.0.0","2.0.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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