:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'recon' .. highlight: bash recon ===== .. conda:recipe:: recon :replaces_section_title: :noindex: The RECON package performs de novo identification and classification of repeat sequence families from genomic sequences. :homepage: http://eddylab.org/software/recon/ :license: GPL2 :recipe: /`recon `_/`meta.yaml `_ .. conda:package:: recon |downloads_recon| |docker_recon| :versions: ``1.08-6``,  ``1.08-5``,  ``1.08-4``,  ``1.08-3``,  ``1.08-2``,  ``1.08-1``,  ``1.08-0`` :depends libgcc-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install recon and update with:: mamba update recon To create a new environment, run:: mamba create --name myenvname recon with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/recon: (see `recon/tags`_ for valid values for ````) .. |downloads_recon| image:: https://img.shields.io/conda/dn/bioconda/recon.svg?style=flat :target: https://anaconda.org/bioconda/recon :alt: (downloads) .. |docker_recon| image:: https://quay.io/repository/biocontainers/recon/status :target: https://quay.io/repository/biocontainers/recon .. _`recon/tags`: https://quay.io/repository/biocontainers/recon?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/recon/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/recon/README.html