:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'red' .. highlight: bash red === .. conda:recipe:: red :replaces_section_title: :noindex: Red \(RepeatsDetector\)\: an intelligent\, rapid\, accurate tool for detecting repeats de\-novo on the genomic scale. :homepage: http://toolsmith.ens.utulsa.edu :license: PUBLIC-DOMAIN / Custom OSS :recipe: /`red `_/`meta.yaml `_ :links: doi: :doi:`10.1186/s12859-015-0654-5` .. conda:package:: red |downloads_red| |docker_red| :versions: ``2018.09.10-2``,  ``2018.09.10-1``,  ``2018.09.10-0``,  ``2015.05.22-3``,  ``2015.05.22-2``,  ``2015.05.22-1``,  ``2015.05.22-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install red and update with:: mamba update red To create a new environment, run:: mamba create --name myenvname red with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/red: (see `red/tags`_ for valid values for ````) .. |downloads_red| image:: https://img.shields.io/conda/dn/bioconda/red.svg?style=flat :target: https://anaconda.org/bioconda/red :alt: (downloads) .. |docker_red| image:: https://quay.io/repository/biocontainers/red/status :target: https://quay.io/repository/biocontainers/red .. _`red/tags`: https://quay.io/repository/biocontainers/red?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/red/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/red/README.html