:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'repeatscout' .. highlight: bash repeatscout =========== .. conda:recipe:: repeatscout :replaces_section_title: :noindex: De novo identification of repeat families in large genomes. :homepage: https://github.com/Dfam-consortium/RepeatScout :documentation: https://github.com/Dfam-consortium/RepeatScout/blob/v1.0.7/README.md :license: CC0 :recipe: /`repeatscout `_/`meta.yaml `_ :links: biotools: :biotools:`RepeatScout` .. conda:package:: repeatscout |downloads_repeatscout| |docker_repeatscout| :versions: .. raw:: html
1.0.7-11.0.7-01.0.6-31.0.6-21.0.6-11.0.6-01.0.5-31.0.5-21.0.5-1 ``1.0.7-1``,  ``1.0.7-0``,  ``1.0.6-3``,  ``1.0.6-2``,  ``1.0.6-1``,  ``1.0.6-0``,  ``1.0.5-3``,  ``1.0.5-2``,  ``1.0.5-1``,  ``1.0.5-0`` .. raw:: html
:depends libgcc: ``>=13`` :depends nseg: :depends perl: :depends perl-file-temp: :depends perl-file-which: :depends trf: :requirements: :additional platforms: .. raw:: html linux-aarch64osx-arm64 .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install repeatscout and update with:: mamba update repeatscout To create a new environment, run:: mamba create --name myenvname repeatscout with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/repeatscout: (see `repeatscout/tags`_ for valid values for ````) .. |downloads_repeatscout| image:: https://img.shields.io/conda/dn/bioconda/repeatscout.svg?style=flat :target: https://anaconda.org/bioconda/repeatscout :alt: (downloads) .. |docker_repeatscout| image:: https://quay.io/repository/biocontainers/repeatscout/status :target: https://quay.io/repository/biocontainers/repeatscout .. _`repeatscout/tags`: https://quay.io/repository/biocontainers/repeatscout?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/repeatscout/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/repeatscout/README.html