:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'reveal' .. highlight: bash reveal ====== .. conda:recipe:: reveal :replaces_section_title: :noindex: Graph based multi genome aligner :homepage: https://github.com/jasperlinthorst/reveal :license: MIT :recipe: /`reveal `_/`meta.yaml `_ .. conda:package:: reveal |downloads_reveal| |docker_reveal| :versions: ``0.1-7``,  ``0.1-6``,  ``0.1-5``,  ``0.1-4``,  ``0.1-3``,  ``0.1-2``,  ``0.1-1``,  ``0.1-0`` :depends intervaltree: :depends libdivsufsort: :depends libgcc-ng: ``>=10.3.0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends matplotlib: :depends networkx: ``2.0.*`` :depends python: ``>=2.7,<2.8.0a0`` :depends python_abi: ``2.7.* *_cp27mu`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install reveal and update with:: mamba update reveal To create a new environment, run:: mamba create --name myenvname reveal with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/reveal: (see `reveal/tags`_ for valid values for ````) .. |downloads_reveal| image:: https://img.shields.io/conda/dn/bioconda/reveal.svg?style=flat :target: https://anaconda.org/bioconda/reveal :alt: (downloads) .. |docker_reveal| image:: https://quay.io/repository/biocontainers/reveal/status :target: https://quay.io/repository/biocontainers/reveal .. _`reveal/tags`: https://quay.io/repository/biocontainers/reveal?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/reveal/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/reveal/README.html