:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'rmetl' .. highlight: bash rmetl ===== .. conda:recipe:: rmetl :replaces_section_title: :noindex: rMETL is a realignment\-based Mobile Element insertion detection Tool for Long read :homepage: https://github.com/tjiangHIT/rMETL :license: MIT / MIT :recipe: /`rmetl `_/`meta.yaml `_ .. conda:package:: rmetl |downloads_rmetl| |docker_rmetl| :versions: ``1.0.4-0`` :depends biopython: :depends cigar: :depends ngmlr: :depends pysam: :depends python: ``2.7.*`` :depends samtools: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install rmetl and update with:: mamba update rmetl To create a new environment, run:: mamba create --name myenvname rmetl with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/rmetl: (see `rmetl/tags`_ for valid values for ````) .. |downloads_rmetl| image:: https://img.shields.io/conda/dn/bioconda/rmetl.svg?style=flat :target: https://anaconda.org/bioconda/rmetl :alt: (downloads) .. |docker_rmetl| image:: https://quay.io/repository/biocontainers/rmetl/status :target: https://quay.io/repository/biocontainers/rmetl .. _`rmetl/tags`: https://quay.io/repository/biocontainers/rmetl?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rmetl/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/rmetl/README.html