:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'rnastructure'
.. highlight: bash

rnastructure
============

.. conda:recipe:: rnastructure
   :replaces_section_title:
   :noindex:

   RNAstructure is a complete package for RNA and DNA secondary structure  prediction and analysis. It includes algorithms for   secondary structure  prediction\, including facility to predict base pairing probabilities. It  also can be used to predict bimolecular structures and can predict the  equilibrium binding affinity of an oligonucleotide to a structured RNA  target. This is useful for siRNA design. It can also predict secondary  structures common to two\, unaligned sequences\, which is much more accurate  than single sequence secondary structure prediction. Finally\, RNAstructure  can take a number of different types of experiment mapping data to constrain  or restrain structure prediction. These include chemical mapping\, enzymatic  mapping\, NMR\, and SHAPE data.

   :homepage: http://rna.urmc.rochester.edu/RNAstructure.html
   :license: GPL / GPLv2
   :recipe: /`rnastructure <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/rnastructure>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/rnastructure/meta.yaml>`_
   :links: biotools: :biotools:`rnastructure`

   


.. conda:package:: rnastructure

   |downloads_rnastructure| |docker_rnastructure|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>6.4-0</code>,  <code>6.3-3</code>,  <code>6.3-2</code>,  <code>6.3-1</code>,  <code>6.3-0</code>,  <code>6.1-2</code>,  <code>6.1-1</code>,  <code>6.1-0</code>,  <code>6.0-1</code>,  </span></summary>
      

      ``6.4-0``,  ``6.3-3``,  ``6.3-2``,  ``6.3-1``,  ``6.3-0``,  ``6.1-2``,  ``6.1-1``,  ``6.1-0``,  ``6.0-1``,  ``6.0-0``,  ``5.7-2``,  ``5.7-1``,  ``5.7-0``

      
      .. raw:: html

         </details>
      

   
   :depends _openmp_mutex: ``>=4.5``
   :depends libgcc-ng: ``>=12``
   :depends libstdcxx-ng: ``>=12``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install rnastructure

   and update with::

      mamba update rnastructure

  To create a new environment, run::

      mamba create --name myenvname rnastructure

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/rnastructure:<tag>

   (see `rnastructure/tags`_ for valid values for ``<tag>``)


.. |downloads_rnastructure| image:: https://img.shields.io/conda/dn/bioconda/rnastructure.svg?style=flat
   :target: https://anaconda.org/bioconda/rnastructure
   :alt:   (downloads)
.. |docker_rnastructure| image:: https://quay.io/repository/biocontainers/rnastructure/status
   :target: https://quay.io/repository/biocontainers/rnastructure
.. _`rnastructure/tags`: https://quay.io/repository/biocontainers/rnastructure?tab=tags


.. raw:: html

    <script>
        var package = "rnastructure";
        var versions = ["6.4","6.3","6.3","6.3","6.3"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rnastructure/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/rnastructure/README.html