:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'rnftools' .. highlight: bash rnftools ======== .. conda:recipe:: rnftools :replaces_section_title: :noindex: RNF framework for NGS\: simulation of reads\, evaluation of mappers\, conversion of RNF\-compliant data. :homepage: http://karel-brinda.github.io/rnftools :license: MIT :recipe: /`rnftools `_/`meta.yaml `_ .. conda:package:: rnftools |downloads_rnftools| |docker_rnftools| :versions: .. raw:: html
0.3.1.3-00.3.1.2-20.3.1.2-10.3.1.1-20.3.1.1-10.3.1.0-20.3.1.0-10.3.0.2-20.3.0.2-1 ``0.3.1.3-0``,  ``0.3.1.2-2``,  ``0.3.1.2-1``,  ``0.3.1.1-2``,  ``0.3.1.1-1``,  ``0.3.1.0-2``,  ``0.3.1.0-1``,  ``0.3.0.2-2``,  ``0.3.0.2-1``,  ``0.3.0.2-0`` .. raw:: html
:depends art: :depends beautifulsoup4: :depends bwa: :depends curesim: :depends dwgsim: :depends gnuplot: ``>=5.0`` :depends mason: :depends pyfaidx: :depends pysam: :depends python: ``>=3.6,<3.7.0a0`` :depends reportlab: ``3.3.0`` :depends samtools: :depends snakemake-minimal: :depends svg42pdf: ``>=0.2.2`` :depends wgsim: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install rnftools and update with:: mamba update rnftools To create a new environment, run:: mamba create --name myenvname rnftools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/rnftools: (see `rnftools/tags`_ for valid values for ````) .. |downloads_rnftools| image:: https://img.shields.io/conda/dn/bioconda/rnftools.svg?style=flat :target: https://anaconda.org/bioconda/rnftools :alt: (downloads) .. |docker_rnftools| image:: https://quay.io/repository/biocontainers/rnftools/status :target: https://quay.io/repository/biocontainers/rnftools .. _`rnftools/tags`: https://quay.io/repository/biocontainers/rnftools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rnftools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/rnftools/README.html