:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'rosella' .. highlight: bash rosella ======= .. conda:recipe:: rosella :replaces_section_title: :noindex: Metagenomic binning pipeline and algorithm using UMAP and HDBSCAN :homepage: https://github.com/rhysnewell/rosella.git :license: GPL3 :recipe: /`rosella `_/`meta.yaml `_ .. conda:package:: rosella |downloads_rosella| |docker_rosella| :versions: .. raw:: html
0.5.3-00.5.2-00.5.1-00.5.0-00.4.2-20.4.2-10.4.2-00.4.1-20.4.1-1 ``0.5.3-0``,  ``0.5.2-0``,  ``0.5.1-0``,  ``0.5.0-0``,  ``0.4.2-2``,  ``0.4.2-1``,  ``0.4.2-0``,  ``0.4.1-2``,  ``0.4.1-1``,  ``0.4.1-0``,  ``0.3.3-0``,  ``0.3.2-0``,  ``0.3.0-0``,  ``0.2.4-0``,  ``0.2.3-0`` .. raw:: html
:depends biopython: ``>=1.81`` :depends coverm: ``>=0.6.1`` :depends flight-genome: ``>=1.6.0`` :depends hdbscan: ``>=0.8.28`` :depends imageio: ``>=2.31`` :depends joblib: ``>=1.1.0,<=1.3`` :depends joblib: ``>=1.3.0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends matplotlib-base: ``>=3.8`` :depends numba: ``>=0.53,<=0.57`` :depends numpy: ``<=1.24`` :depends openssl: ``>=3.2.0,<4.0a0`` :depends pandas: ``>=1.3`` :depends pebble: ``>=5.0`` :depends pynndescent: ``>=0.5.7`` :depends python: ``>=3.8,<=3.10`` :depends scikit-bio: ``>=0.5.7`` :depends scikit-learn: ``>=1.0.2,<=1.1`` :depends scipy: ``<=1.11`` :depends seaborn: ``>=0.12`` :depends tbb: ``>=2021.10.0`` :depends threadpoolctl: ``>=3.2.0`` :depends tqdm: ``>=4.66`` :depends umap-learn: ``>=0.5.3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install rosella and update with:: mamba update rosella To create a new environment, run:: mamba create --name myenvname rosella with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/rosella: (see `rosella/tags`_ for valid values for ````) .. |downloads_rosella| image:: https://img.shields.io/conda/dn/bioconda/rosella.svg?style=flat :target: https://anaconda.org/bioconda/rosella :alt: (downloads) .. |docker_rosella| image:: https://quay.io/repository/biocontainers/rosella/status :target: https://quay.io/repository/biocontainers/rosella .. _`rosella/tags`: https://quay.io/repository/biocontainers/rosella?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rosella/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/rosella/README.html