:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ruffus' .. highlight: bash ruffus ====== .. conda:recipe:: ruffus :replaces_section_title: :noindex: Light\-weight Python Computational Pipeline Management :homepage: http://www.ruffus.org.uk/ :license: MIT :recipe: /`ruffus `_/`meta.yaml `_ .. conda:package:: ruffus |downloads_ruffus| |docker_ruffus| :versions: .. raw:: html
2.8.4-12.8.4-02.8.3-02.8.2-02.8.1-12.8.1-02.8-02.7-02.6.3-1 ``2.8.4-1``,  ``2.8.4-0``,  ``2.8.3-0``,  ``2.8.2-0``,  ``2.8.1-1``,  ``2.8.1-0``,  ``2.8-0``,  ``2.7-0``,  ``2.6.3-1``,  ``2.6.3-0``,  ``2.4.1-1``,  ``2.4.1-0`` .. raw:: html
:depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ruffus and update with:: mamba update ruffus To create a new environment, run:: mamba create --name myenvname ruffus with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ruffus: (see `ruffus/tags`_ for valid values for ````) .. |downloads_ruffus| image:: https://img.shields.io/conda/dn/bioconda/ruffus.svg?style=flat :target: https://anaconda.org/bioconda/ruffus :alt: (downloads) .. |docker_ruffus| image:: https://quay.io/repository/biocontainers/ruffus/status :target: https://quay.io/repository/biocontainers/ruffus .. _`ruffus/tags`: https://quay.io/repository/biocontainers/ruffus?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ruffus/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ruffus/README.html