:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'rvtests' .. highlight: bash rvtests ======= .. conda:recipe:: rvtests :replaces_section_title: :noindex: Rare variant test software for next generation sequencing data :homepage: https://github.com/zhanxw/rvtests :license: GPL :recipe: /`rvtests `_/`meta.yaml `_ :links: doi: :doi:`10.1093/bioinformatics/btw079`, biotools: :biotools:`rvtests` .. conda:package:: rvtests |downloads_rvtests| |docker_rvtests| :versions: ``2.0.7-2``,  ``2.0.6-1`` :depends libgfortran: ``>=3.0`` :depends libstdcxx-ng: ``>=4.9`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install rvtests and update with:: mamba update rvtests To create a new environment, run:: mamba create --name myenvname rvtests with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/rvtests: (see `rvtests/tags`_ for valid values for ````) .. |downloads_rvtests| image:: https://img.shields.io/conda/dn/bioconda/rvtests.svg?style=flat :target: https://anaconda.org/bioconda/rvtests :alt: (downloads) .. |docker_rvtests| image:: https://quay.io/repository/biocontainers/rvtests/status :target: https://quay.io/repository/biocontainers/rvtests .. _`rvtests/tags`: https://quay.io/repository/biocontainers/rvtests?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rvtests/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/rvtests/README.html