:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'sankoff' .. highlight: bash sankoff ======= .. conda:recipe:: sankoff :replaces_section_title: :noindex: Fast implementation of sankoff algorithm on phylogeny :homepage: https://github.com/hzi-bifo/sankoff :license: GPL / GPL 3.0 :recipe: /`sankoff `_/`meta.yaml `_ .. conda:package:: sankoff |downloads_sankoff| |docker_sankoff| :versions: ``0.2-3``,  ``0.2-2``,  ``0.2-1``,  ``0.2-0``,  ``0.1-0`` :depends boost: ``>=1.78.0,<1.78.1.0a0`` :depends boost-cpp: ``>=1.78.0,<1.78.1.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends tbb: ``>=2021.4.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install sankoff and update with:: mamba update sankoff To create a new environment, run:: mamba create --name myenvname sankoff with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/sankoff: (see `sankoff/tags`_ for valid values for ````) .. |downloads_sankoff| image:: https://img.shields.io/conda/dn/bioconda/sankoff.svg?style=flat :target: https://anaconda.org/bioconda/sankoff :alt: (downloads) .. |docker_sankoff| image:: https://quay.io/repository/biocontainers/sankoff/status :target: https://quay.io/repository/biocontainers/sankoff .. _`sankoff/tags`: https://quay.io/repository/biocontainers/sankoff?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sankoff/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/sankoff/README.html