:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'sansa' .. highlight: bash sansa ===== .. conda:recipe:: sansa :replaces_section_title: :noindex: Structural variant annotation :homepage: https://github.com/dellytools/sansa :license: BSD / BSD-3-Clause :recipe: /`sansa `_/`meta.yaml `_ .. conda:package:: sansa |downloads_sansa| |docker_sansa| :versions: .. raw:: html
0.2.3-00.2.2-20.2.2-10.2.2-00.2.1-10.2.1-00.1.1-00.0.8-60.0.8-5 ``0.2.3-0``,  ``0.2.2-2``,  ``0.2.2-1``,  ``0.2.2-0``,  ``0.2.1-1``,  ``0.2.1-0``,  ``0.1.1-0``,  ``0.0.8-6``,  ``0.0.8-5``,  ``0.0.8-4``,  ``0.0.8-3``,  ``0.0.8-2``,  ``0.0.8-1``,  ``0.0.8-0``,  ``0.0.7-1``,  ``0.0.7-0``,  ``0.0.6-0`` .. raw:: html
:depends boost-cpp: :depends bzip2: ``>=1.0.8,<2.0a0`` :depends htslib: ``>=1.21,<1.23.0a0`` :depends libdeflate: ``>=1.22,<1.23.0a0`` :depends libgcc: ``>=13`` :depends libstdcxx: ``>=13`` :depends libzlib: ``>=1.3.1,<2.0a0`` :depends zlib: :requirements: :additional platforms: .. raw:: html linux-aarch64osx-arm64 .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install sansa and update with:: mamba update sansa To create a new environment, run:: mamba create --name myenvname sansa with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/sansa: (see `sansa/tags`_ for valid values for ````) .. |downloads_sansa| image:: https://img.shields.io/conda/dn/bioconda/sansa.svg?style=flat :target: https://anaconda.org/bioconda/sansa :alt: (downloads) .. |docker_sansa| image:: https://quay.io/repository/biocontainers/sansa/status :target: https://quay.io/repository/biocontainers/sansa .. _`sansa/tags`: https://quay.io/repository/biocontainers/sansa?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sansa/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/sansa/README.html