:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'scalop' .. highlight: bash scalop ====== .. conda:recipe:: scalop :replaces_section_title: :noindex: SCALOP \- Sequence\-based antibody Canonical LOoP structure annotation :homepage: https://github.com/oxpig/SCALOP :license: BSD / BSD-3-Clause :recipe: /`scalop `_/`meta.yaml `_ .. conda:package:: scalop |downloads_scalop| |docker_scalop| :versions: ``2021.01.27-0`` :depends biopython: :depends hmmer: ``>=3.1`` :depends numpy: :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install scalop and update with:: mamba update scalop To create a new environment, run:: mamba create --name myenvname scalop with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/scalop: (see `scalop/tags`_ for valid values for ````) .. |downloads_scalop| image:: https://img.shields.io/conda/dn/bioconda/scalop.svg?style=flat :target: https://anaconda.org/bioconda/scalop :alt: (downloads) .. |docker_scalop| image:: https://quay.io/repository/biocontainers/scalop/status :target: https://quay.io/repository/biocontainers/scalop .. _`scalop/tags`: https://quay.io/repository/biocontainers/scalop?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scalop/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/scalop/README.html