:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'schavott' .. highlight: bash schavott ======== .. conda:recipe:: schavott :replaces_section_title: :noindex: Assembly and scaffolding of bacterial genomes in real time using MinION\-sequencing. :homepage: http://github.com/emilhaegglund/schavott :license: MIT :recipe: /`schavott `_/`meta.yaml `_ .. conda:package:: schavott |downloads_schavott| |docker_schavott| :versions: ``0.5.0-2``,  ``0.5.0-1``,  ``0.5.0-0``,  ``0.4.1-0``,  ``0.3-0``,  ``0.2-0`` :depends bokeh: :depends h5py: ``>=2.2.0`` :depends numpy: :depends pyfasta: :depends python: :depends watchdog: ``>=0.8.3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install schavott and update with:: mamba update schavott To create a new environment, run:: mamba create --name myenvname schavott with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/schavott: (see `schavott/tags`_ for valid values for ````) .. |downloads_schavott| image:: https://img.shields.io/conda/dn/bioconda/schavott.svg?style=flat :target: https://anaconda.org/bioconda/schavott :alt: (downloads) .. |docker_schavott| image:: https://quay.io/repository/biocontainers/schavott/status :target: https://quay.io/repository/biocontainers/schavott .. _`schavott/tags`: https://quay.io/repository/biocontainers/schavott?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/schavott/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/schavott/README.html