:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'scvi' .. highlight: bash scvi ==== .. conda:recipe:: scvi :replaces_section_title: :noindex: Single\-cell Variational Inference :homepage: https://github.com/YosefLab/scVI :documentation: https://scvi.readthedocs.io :license: MIT / MIT License :recipe: /`scvi `_/`meta.yaml `_ Single\-cell Variational Inference .. conda:package:: scvi |downloads_scvi| |docker_scvi| :versions: .. raw:: html
0.6.8-00.6.7-00.6.5-00.6.4-00.6.3-10.6.3-00.6.1-00.6.0-00.5.0-0 ``0.6.8-0``,  ``0.6.7-0``,  ``0.6.5-0``,  ``0.6.4-0``,  ``0.6.3-1``,  ``0.6.3-0``,  ``0.6.1-0``,  ``0.6.0-0``,  ``0.5.0-0``,  ``0.4.1-1``,  ``0.4.1-0``,  ``0.3.0-1``,  ``0.3.0-0``,  ``0.2.4-0``,  ``0.2.3-0``,  ``0.2.2-0``,  ``0.2.1-0``,  ``0.2.0-0``,  ``0.1.6-0``,  ``0.1.5-0``,  ``0.1.4-0``,  ``0.1.3-0``,  ``0.1.2-0`` .. raw:: html
:depends anndata: ``>=0.7`` :depends h5py: ``>=2.9.0`` :depends hyperopt: ``0.1.2`` :depends matplotlib-base: ``>=3.0.3`` :depends numpy: ``>=1.16.2`` :depends pandas: ``>=0.25`` :depends python: ``>=3.6`` :depends pytorch: ``>=1.1`` :depends scanpy: ``>=1.4.6`` :depends scikit-learn: ``>=0.20.3`` :depends tqdm: ``>=4.31.1`` :depends xlrd: ``>=1.2.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install scvi and update with:: mamba update scvi To create a new environment, run:: mamba create --name myenvname scvi with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/scvi: (see `scvi/tags`_ for valid values for ````) .. |downloads_scvi| image:: https://img.shields.io/conda/dn/bioconda/scvi.svg?style=flat :target: https://anaconda.org/bioconda/scvi :alt: (downloads) .. |docker_scvi| image:: https://quay.io/repository/biocontainers/scvi/status :target: https://quay.io/repository/biocontainers/scvi .. _`scvi/tags`: https://quay.io/repository/biocontainers/scvi?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scvi/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/scvi/README.html