:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'sdrf-pipelines' .. highlight: bash sdrf-pipelines ============== .. conda:recipe:: sdrf-pipelines :replaces_section_title: :noindex: Translate\, convert SDRF to configuration pipelines :homepage: https://github.com/bigbio/sdrf-pipelines :license: Apache 2 :recipe: /`sdrf-pipelines `_/`meta.yaml `_ .. conda:package:: sdrf-pipelines |downloads_sdrf-pipelines| |docker_sdrf-pipelines| :versions: .. raw:: html
0.0.25-00.0.24-00.0.23-00.0.22-00.0.21-00.0.20-00.0.19-00.0.18-00.0.17-0 ``0.0.25-0``,  ``0.0.24-0``,  ``0.0.23-0``,  ``0.0.22-0``,  ``0.0.21-0``,  ``0.0.20-0``,  ``0.0.19-0``,  ``0.0.18-0``,  ``0.0.17-0``,  ``0.0.14-0``,  ``0.0.13-0``,  ``0.0.12-0``,  ``0.0.11-0``,  ``0.0.10-0``,  ``0.0.9-0``,  ``0.0.8-0``,  ``0.0.7-0``,  ``0.0.5-0``,  ``0.0.4-0``,  ``0.0.3-0``,  ``0.0.2-0`` .. raw:: html
:depends click: :depends defusedxml: :depends pandas: :depends pandas_schema: :depends pyaml: :depends pytest: :depends python: ``>=3.5`` :depends requests: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install sdrf-pipelines and update with:: mamba update sdrf-pipelines To create a new environment, run:: mamba create --name myenvname sdrf-pipelines with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/sdrf-pipelines: (see `sdrf-pipelines/tags`_ for valid values for ````) .. |downloads_sdrf-pipelines| image:: https://img.shields.io/conda/dn/bioconda/sdrf-pipelines.svg?style=flat :target: https://anaconda.org/bioconda/sdrf-pipelines :alt: (downloads) .. |docker_sdrf-pipelines| image:: https://quay.io/repository/biocontainers/sdrf-pipelines/status :target: https://quay.io/repository/biocontainers/sdrf-pipelines .. _`sdrf-pipelines/tags`: https://quay.io/repository/biocontainers/sdrf-pipelines?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sdrf-pipelines/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/sdrf-pipelines/README.html