:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'segemehl' .. highlight: bash segemehl ======== .. conda:recipe:: segemehl :replaces_section_title: :noindex: Short read mapping with gaps :homepage: http://www.bioinf.uni-leipzig.de/Software/segemehl/ :license: GPL3 :recipe: /`segemehl `_/`meta.yaml `_ :links: biotools: :biotools:`segemehl`, usegalaxy-eu: :usegalaxy-eu:`segemehl` .. conda:package:: segemehl |downloads_segemehl| |docker_segemehl| :versions: .. raw:: html
0.3.4-90.3.4-80.3.4-70.3.4-60.3.4-50.3.4-40.3.4-30.3.4-20.3.4-1 ``0.3.4-9``,  ``0.3.4-8``,  ``0.3.4-7``,  ``0.3.4-6``,  ``0.3.4-5``,  ``0.3.4-4``,  ``0.3.4-3``,  ``0.3.4-2``,  ``0.3.4-1``,  ``0.3.4-0``,  ``0.3.1-8``,  ``0.3.1-7``,  ``0.3.1-6``,  ``0.3.1-5``,  ``0.3.1-4``,  ``0.3.1-3``,  ``0.3.1-2``,  ``0.3.1-1``,  ``0.3.1-0``,  ``0.2.0-10``,  ``0.2.0-9``,  ``0.2.0-8``,  ``0.2.0-7``,  ``0.2.0-6``,  ``0.2.0-5``,  ``0.2.0-4``,  ``0.2.0-3``,  ``0.2.0-2``,  ``0.2.0-1``,  ``0.2.0-0`` .. raw:: html
:depends htslib: ``>=1.17,<1.20.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends ncurses: ``>=6.3,<7.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install segemehl and update with:: mamba update segemehl To create a new environment, run:: mamba create --name myenvname segemehl with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/segemehl: (see `segemehl/tags`_ for valid values for ````) .. |downloads_segemehl| image:: https://img.shields.io/conda/dn/bioconda/segemehl.svg?style=flat :target: https://anaconda.org/bioconda/segemehl :alt: (downloads) .. |docker_segemehl| image:: https://quay.io/repository/biocontainers/segemehl/status :target: https://quay.io/repository/biocontainers/segemehl .. _`segemehl/tags`: https://quay.io/repository/biocontainers/segemehl?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/segemehl/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/segemehl/README.html