:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'selam'
.. highlight: bash

selam
=====

.. conda:recipe:: selam
   :replaces_section_title:
   :noindex:

   Simulation of Epistasis Local adaptation\, with Ancestry and Mate choice

   :homepage: https://github.com/russcd/SELAM/
   :license: GPL3
   :recipe: /`selam <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/selam>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/selam/meta.yaml>`_
   :links: doi: :doi:`10.1093/bioinformatics/btw365`

   SELAM \(Simulation of Epistasis\, Local adaptation with Admixture and Mate
   choice\) is a forward time population genetic simulation for studying
   admixture between ancestral subpopulations. This program tracks local
   ancestry along chromosomes. SELAM supports complex demography
   scenarios\, including changes in population sizes\, migration rates\, and
   arbitrary numbers of subpopulations. This program can also accommodate
   sophisticated selective regimes\, including dominance\, epistasis\, local
   adaptation\, and mate choice.



.. conda:package:: selam

   |downloads_selam| |docker_selam|

   :versions:
      
      

      ``0.9-3``,  ``0.9-2``,  ``0.9-1``,  ``0.9-0``

      

   
   :depends gsl: ``>=2.7,<2.8.0a0``
   :depends libgcc-ng: ``>=12``
   :depends libstdcxx-ng: ``>=12``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install selam

   and update with::

      mamba update selam

  To create a new environment, run::

      mamba create --name myenvname selam

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/selam:<tag>

   (see `selam/tags`_ for valid values for ``<tag>``)


.. |downloads_selam| image:: https://img.shields.io/conda/dn/bioconda/selam.svg?style=flat
   :target: https://anaconda.org/bioconda/selam
   :alt:   (downloads)
.. |docker_selam| image:: https://quay.io/repository/biocontainers/selam/status
   :target: https://quay.io/repository/biocontainers/selam
.. _`selam/tags`: https://quay.io/repository/biocontainers/selam?tab=tags


.. raw:: html

    <script>
        var package = "selam";
        var versions = ["0.9","0.9","0.9","0.9"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/selam/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/selam/README.html