:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'seq-to-first-iso' .. highlight: bash seq-to-first-iso ================ .. conda:recipe:: seq-to-first-iso :replaces_section_title: :noindex: Compute first two isotopologues intensity from peptide sequence :homepage: https://github.com/pierrepo/seq-to-first-iso :documentation: https://seq-to-first-iso.readthedocs.io/ :license: BSD / BSD 3-Clause License :recipe: /`seq-to-first-iso `_/`meta.yaml `_ Seq\-to\-first\-iso is a Python package that computes isotopologues M0 and M1 of peptides with a 99.99 \% 12C enrichment for quantification by SLIM\-labeling. It simulates auxotrophies by differentiating labelled and unlabelled amino acids. .. conda:package:: seq-to-first-iso |downloads_seq-to-first-iso| |docker_seq-to-first-iso| :versions: ``1.1.0-0``,  ``1.0.0-0``,  ``0.5.1-0``,  ``0.5.0-0`` :depends pandas: :depends pyteomics: :depends python: ``>=3.6`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install seq-to-first-iso and update with:: mamba update seq-to-first-iso To create a new environment, run:: mamba create --name myenvname seq-to-first-iso with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/seq-to-first-iso: (see `seq-to-first-iso/tags`_ for valid values for ````) .. |downloads_seq-to-first-iso| image:: https://img.shields.io/conda/dn/bioconda/seq-to-first-iso.svg?style=flat :target: https://anaconda.org/bioconda/seq-to-first-iso :alt: (downloads) .. |docker_seq-to-first-iso| image:: https://quay.io/repository/biocontainers/seq-to-first-iso/status :target: https://quay.io/repository/biocontainers/seq-to-first-iso .. _`seq-to-first-iso/tags`: https://quay.io/repository/biocontainers/seq-to-first-iso?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/seq-to-first-iso/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/seq-to-first-iso/README.html