:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'sga_ice' .. highlight: bash sga_ice ======= .. conda:recipe:: sga_ice :replaces_section_title: :noindex: Iterative error correction of long 250 or 300 bp Illumina reads minimizes the total amount of erroneous reads\, which improves contig assembly :homepage: https://github.com/hillerlab/IterativeErrorCorrection :license: MIT license :recipe: /`sga_ice `_/`meta.yaml `_ .. conda:package:: sga_ice |downloads_sga_ice| |docker_sga_ice| :versions: ``1.01-0`` :depends python: :depends sga: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install sga_ice and update with:: mamba update sga_ice To create a new environment, run:: mamba create --name myenvname sga_ice with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/sga_ice: (see `sga_ice/tags`_ for valid values for ````) .. |downloads_sga_ice| image:: https://img.shields.io/conda/dn/bioconda/sga_ice.svg?style=flat :target: https://anaconda.org/bioconda/sga_ice :alt: (downloads) .. |docker_sga_ice| image:: https://quay.io/repository/biocontainers/sga_ice/status :target: https://quay.io/repository/biocontainers/sga_ice .. _`sga_ice/tags`: https://quay.io/repository/biocontainers/sga_ice?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sga_ice/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/sga_ice/README.html