:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'sgcocaller' .. highlight: bash sgcocaller ========== .. conda:recipe:: sgcocaller :replaces_section_title: :noindex: Personalized haplotype construction and crossover calling in single\-cell DNA sequenced gamete cells. :homepage: https://gitlab.svi.edu.au/biocellgen-public/sgcocaller :license: MIT :recipe: /`sgcocaller `_/`meta.yaml `_ :links: biotools: :biotools:`sgcocaller` .. conda:package:: sgcocaller |downloads_sgcocaller| |docker_sgcocaller| :versions: .. raw:: html
0.3.9-20.3.9-10.3.9-00.3.7-20.3.7-10.3.7-00.3.6-10.3.6-00.3.5-0 ``0.3.9-2``,  ``0.3.9-1``,  ``0.3.9-0``,  ``0.3.7-2``,  ``0.3.7-1``,  ``0.3.7-0``,  ``0.3.6-1``,  ``0.3.6-0``,  ``0.3.5-0``,  ``0.3.4-0`` .. raw:: html
:depends _openmp_mutex: ``>=4.5`` :depends bzip2: ``>=1.0.8,<2.0a0`` :depends htslib: ``>=1.17,<1.20.0a0`` :depends libgcc-ng: ``>=12`` :depends libgfortran-ng: :depends libgfortran5: ``>=10.4.0`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends pcre: ``>=8.45,<9.0a0`` :depends zlib: ``>=1.2.13,<1.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install sgcocaller and update with:: mamba update sgcocaller To create a new environment, run:: mamba create --name myenvname sgcocaller with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/sgcocaller: (see `sgcocaller/tags`_ for valid values for ````) .. |downloads_sgcocaller| image:: https://img.shields.io/conda/dn/bioconda/sgcocaller.svg?style=flat :target: https://anaconda.org/bioconda/sgcocaller :alt: (downloads) .. |docker_sgcocaller| image:: https://quay.io/repository/biocontainers/sgcocaller/status :target: https://quay.io/repository/biocontainers/sgcocaller .. _`sgcocaller/tags`: https://quay.io/repository/biocontainers/sgcocaller?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sgcocaller/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/sgcocaller/README.html