:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'shapeit4' .. highlight: bash shapeit4 ======== .. conda:recipe:: shapeit4 :replaces_section_title: :noindex: fast and accurate method for estimation of haplotypes \(phasing\) :homepage: https://odelaneau.github.io/shapeit4/ :license: MIT :recipe: /`shapeit4 `_/`meta.yaml `_ :links: doi: :doi:`10.1101/493403` .. conda:package:: shapeit4 |downloads_shapeit4| |docker_shapeit4| :versions: .. raw:: html
4.2.2-34.2.2-24.2.2-14.2.2-04.2.1-04.2.0-14.2.0-04.1.3-14.1.3-0 ``4.2.2-3``,  ``4.2.2-2``,  ``4.2.2-1``,  ``4.2.2-0``,  ``4.2.1-0``,  ``4.2.0-1``,  ``4.2.0-0``,  ``4.1.3-1``,  ``4.1.3-0``,  ``4.1-0``,  ``4.0-0`` .. raw:: html
:depends boost-cpp: ``>=1.78.0,<1.78.1.0a0`` :depends bzip2: ``>=1.0.8,<2.0a0`` :depends htslib: ``1.11.*`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install shapeit4 and update with:: mamba update shapeit4 To create a new environment, run:: mamba create --name myenvname shapeit4 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/shapeit4: (see `shapeit4/tags`_ for valid values for ````) .. |downloads_shapeit4| image:: https://img.shields.io/conda/dn/bioconda/shapeit4.svg?style=flat :target: https://anaconda.org/bioconda/shapeit4 :alt: (downloads) .. |docker_shapeit4| image:: https://quay.io/repository/biocontainers/shapeit4/status :target: https://quay.io/repository/biocontainers/shapeit4 .. _`shapeit4/tags`: https://quay.io/repository/biocontainers/shapeit4?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/shapeit4/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/shapeit4/README.html