:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'shark' .. highlight: bash shark ===== .. conda:recipe:: shark :replaces_section_title: :noindex: Mapping\-free filtering of useless RNA\-Seq reads :homepage: https://algolab.github.io/shark/ :license: GPL-3.0-or-later :recipe: /`shark `_/`meta.yaml `_ :links: biotools: :biotools:`shark` .. conda:package:: shark |downloads_shark| |docker_shark| :versions: ``1.2.0-2``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.1.0-0``,  ``1.0.0-1``,  ``1.0.0-0`` :depends libgcc-ng: ``>=10.3.0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends libzlib: ``>=1.2.11,<1.3.0a0`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install shark and update with:: conda update shark or use the docker container:: docker pull quay.io/biocontainers/shark: (see `shark/tags`_ for valid values for ````) .. |downloads_shark| image:: https://img.shields.io/conda/dn/bioconda/shark.svg?style=flat :target: https://anaconda.org/bioconda/shark :alt: (downloads) .. |docker_shark| image:: https://quay.io/repository/biocontainers/shark/status :target: https://quay.io/repository/biocontainers/shark .. _`shark/tags`: https://quay.io/repository/biocontainers/shark?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/shark/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/shark/README.html