:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'simple_sv_annotation' .. highlight: bash simple_sv_annotation ==================== .. conda:recipe:: simple_sv_annotation :replaces_section_title: :noindex: Simplify snpEff annotations for interesting cases :homepage: https://github.com/AstraZeneca-NGS/simple_sv_annotation :license: MIT :recipe: /`simple_sv_annotation `_/`meta.yaml `_ .. conda:package:: simple_sv_annotation |downloads_simple_sv_annotation| |docker_simple_sv_annotation| :versions: .. raw:: html
2019.02.18-02018.05.29-12018.05.29-02017.05.14-02017.02.17-02016.07.08-12016.07.08-02016.06.15-12016.06.15-0 ``2019.02.18-0``,  ``2018.05.29-1``,  ``2018.05.29-0``,  ``2017.05.14-0``,  ``2017.02.17-0``,  ``2016.07.08-1``,  ``2016.07.08-0``,  ``2016.06.15-1``,  ``2016.06.15-0``,  ``2015.11.24-0``,  ``2015.11.16-0``,  ``2015.11.05-0``,  ``2015.10.23-0`` .. raw:: html
:depends python: :depends pyvcf: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install simple_sv_annotation and update with:: mamba update simple_sv_annotation To create a new environment, run:: mamba create --name myenvname simple_sv_annotation with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/simple_sv_annotation: (see `simple_sv_annotation/tags`_ for valid values for ````) .. |downloads_simple_sv_annotation| image:: https://img.shields.io/conda/dn/bioconda/simple_sv_annotation.svg?style=flat :target: https://anaconda.org/bioconda/simple_sv_annotation :alt: (downloads) .. |docker_simple_sv_annotation| image:: https://quay.io/repository/biocontainers/simple_sv_annotation/status :target: https://quay.io/repository/biocontainers/simple_sv_annotation .. _`simple_sv_annotation/tags`: https://quay.io/repository/biocontainers/simple_sv_annotation?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/simple_sv_annotation/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/simple_sv_annotation/README.html