:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'simplesam' .. highlight: bash simplesam ========= .. conda:recipe:: simplesam :replaces_section_title: :noindex: Simple pure Python SAM parser and objects for working with SAM records :homepage: http://mattshirley.com :documentation: http://simplesam.readthedocs.io/en/latest/ :developer docs: https://github.com/mdshw5/simplesam :license: MIT :recipe: /`simplesam `_/`meta.yaml `_ .. conda:package:: simplesam |downloads_simplesam| |docker_simplesam| :versions: ``0.1.4.1-0``,  ``0.1.4.0-0``,  ``0.1.3.2-0``,  ``0.1.3.1-1``,  ``0.1.3.1-0`` :depends python: :depends setuptools: :depends six: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install simplesam and update with:: mamba update simplesam To create a new environment, run:: mamba create --name myenvname simplesam with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/simplesam: (see `simplesam/tags`_ for valid values for ````) .. |downloads_simplesam| image:: https://img.shields.io/conda/dn/bioconda/simplesam.svg?style=flat :target: https://anaconda.org/bioconda/simplesam :alt: (downloads) .. |docker_simplesam| image:: https://quay.io/repository/biocontainers/simplesam/status :target: https://quay.io/repository/biocontainers/simplesam .. _`simplesam/tags`: https://quay.io/repository/biocontainers/simplesam?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/simplesam/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/simplesam/README.html