:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'sinto' .. highlight: bash sinto ===== .. conda:recipe:: sinto :replaces_section_title: :noindex: sinto\: tools for single\-cell data processing :homepage: https://timoast.github.io/sinto/ :developer docs: https://github.com/timoast/sinto :license: MIT / MIT :recipe: /`sinto `_/`meta.yaml `_ .. conda:package:: sinto |downloads_sinto| |docker_sinto| :versions: .. raw:: html
0.10.0-00.9.0-00.8.4-00.8.3-00.8.1-00.8.0-00.7.6-00.7.5-00.7.4-0 ``0.10.0-0``,  ``0.9.0-0``,  ``0.8.4-0``,  ``0.8.3-0``,  ``0.8.1-0``,  ``0.8.0-0``,  ``0.7.6-0``,  ``0.7.5-0``,  ``0.7.4-0``,  ``0.7.3.1-0`` .. raw:: html
:depends numpy: :depends pysam: ``>=0.14,<0.21`` :depends python: ``>=3.8`` :depends scipy: :depends umi_tools: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install sinto and update with:: mamba update sinto To create a new environment, run:: mamba create --name myenvname sinto with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/sinto: (see `sinto/tags`_ for valid values for ````) .. |downloads_sinto| image:: https://img.shields.io/conda/dn/bioconda/sinto.svg?style=flat :target: https://anaconda.org/bioconda/sinto :alt: (downloads) .. |docker_sinto| image:: https://quay.io/repository/biocontainers/sinto/status :target: https://quay.io/repository/biocontainers/sinto .. _`sinto/tags`: https://quay.io/repository/biocontainers/sinto?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sinto/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/sinto/README.html