:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'spectrassembler' .. highlight: bash spectrassembler =============== .. conda:recipe:: spectrassembler :replaces_section_title: :noindex: Tool \(experimental\) to compute layout from overlaps with spectral algorithm :homepage: https://github.com/antrec/spectrassembler :license: MIT :recipe: /`spectrassembler `_/`meta.yaml `_ .. conda:package:: spectrassembler |downloads_spectrassembler| |docker_spectrassembler| :versions: ``0.0.1a1-4``,  ``0.0.1a1-3``,  ``0.0.1a1-2``,  ``0.0.1a1-1``,  ``0.0.1a1-0`` :depends biopython: :depends bwa: :depends minimap: :depends numpy: :depends poa: :depends python: ``<3`` :depends scipy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install spectrassembler and update with:: mamba update spectrassembler To create a new environment, run:: mamba create --name myenvname spectrassembler with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/spectrassembler: (see `spectrassembler/tags`_ for valid values for ````) .. |downloads_spectrassembler| image:: https://img.shields.io/conda/dn/bioconda/spectrassembler.svg?style=flat :target: https://anaconda.org/bioconda/spectrassembler :alt: (downloads) .. |docker_spectrassembler| image:: https://quay.io/repository/biocontainers/spectrassembler/status :target: https://quay.io/repository/biocontainers/spectrassembler .. _`spectrassembler/tags`: https://quay.io/repository/biocontainers/spectrassembler?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/spectrassembler/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/spectrassembler/README.html